Nucleotide Transformer v3 (NTv3)
### TL;DR
Nucleotide Transformer v3 (NTv3) is a multi-species genomics foundation model developed by InstaDeep. It unifies representation learning, functional track and genome annotation prediction, and controllable sequence generation in a single backbone that operates on 1 Mb genomic contexts at single nucleotide resolution.
Key Insights & Metrics
Key Features
- Unified multi-species genomics foundation model
- Operates on 1 Mb genomic contexts at single nucleotide resolution
- Supports functional track prediction and genome annotation
- Enables controllable sequence generation via masked diffusion language modeling
- Post-trained with supervised learning on approximately 16,000 functional tracks and annotation labels from 24 species
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